API Reference
=============

EvoTen: Vectorized, differentiable computation of tree likelihoods supporting different computation backends.

This page provides a complete reference to all public classes, functions, and modules in EvoTen.

Core Module
-----------

The main evoten module exports the primary classes and functions.

.. automodule:: evoten

Model
-----

.. automodule:: evoten.model

Tree Handler
------------

.. automodule:: evoten.tree_handler

Substitution Models
-------------------

.. automodule:: evoten.substitution_models

Utilities
---------

.. automodule:: evoten.util

Backend: PyTorch
----------------

.. automodule:: evoten.backend_pytorch

Backend: TensorFlow
-------------------

.. automodule:: evoten.backend_tf